The Chromosome 7 Annotation Project
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Table: Ultra-conserved elements on chromosome 7

Ultra conserved element Upstream gene Within Downstream gene Human Any Species Known Gene Overlap RNAfold Chicken Fugu
name type length Build 34 coords distance name gene name distance mRNA spliced EST mRNA EST UTR CDS intron 10k upstr 10k down intergenic p-value overlap identical overlap identical
uc.204 n 202 chr7:1010242-1010443 66105 LOC90637 \N FLJ23471 202009 0 0 0 0 0 0 0 0 0 202 0.0326 202 196 0 0
uc.205 n 252 chr7:20574105-20574356 3283 SP8 \N SP4 637661 0 0 0 0 0 0 0 252 0 0 0.4879 252 243 242 192
uc.206 n 499 chr7:20748081-20748579 177259 SP8 \N SP4 463438 0 0 0 0 0 0 0 0 0 499 0.164 499 496 499 410
uc.207 n 230 chr7:21555809-21556038 260158 SP4 DNAH11 RAM2 128795 0 0 0 0 0 0 230 0 0 0 0.4412 226 216 0 0
uc.208 e 218 chr7:23303942-23304159 30642 BC026177 TRA2A AB052759 7598 0 218 142 218 0 0 218 0 0 0 0.4948 218 215 0 0
uc.209 e 250 chr7:23304160-23304409 30860 BC026177 TRA2A AB052759 7348 0 164 164 250 0 0 250 0 0 0 0.3143 250 246 188 129
uc.210 p 257 chr7:26439350-26439606 118670 D42038 \N SCAP2 9355 0 0 0 47 0 0 0 0 257 0 0.4429 257 252 152 102
uc.211 n 291 chr7:26471744-26472034 151064 D42038 SCAP2 HOXA1 403171 0 0 0 6 0 0 291 0 0 0 0.0472 291 287 255 191
uc.212 p 205 chr7:26884210-26884414 6412 HOXA1 \N HOXA3 3676 205 0 205 205 0 0 0 205 205 0 0.403 205 190 199 174
uc.213 e 201 chr7:26925404-26925604 12779 HOXA4 HOXA5 HOXA6 1783 143 156 201 201 48 95 0 58 58 0 0.1436 201 146 201 172
uc.214 n 243 chr7:31144670-31144912 21889 NEUROD6 \N LOC223075 154337 0 0 0 0 0 0 0 0 0 243 0.0007 243 215 161 138
uc.215 n 262 chr7:41933365-41933626 449909 INHBA GLI3 C7orf25 756027 0 0 0 0 0 0 262 0 0 0 0.0103 262 260 262 227
uc.216 p 312 chr7:50102955-50103266 225327 ZPBP \N ZNFN1A1 8175 0 0 0 94 0 0 0 312 0 0 0.3542 312 310 278 192
uc.217 p 221 chr7:54378405-54378625 16432 MGC33530 \N SEC61G 183072 0 175 175 221 0 0 0 0 0 221 0.1069 221 217 0 0
uc.218 p 286 chr7:69215092-69215377 3016962 FLJ13195 AUTS2 AK096991 792645 0 0 0 182 0 0 286 0 0 0 0.0136 286 283 273 167
uc.219 p 210 chr7:69392897-69393106 3194767 FLJ13195 AUTS2 AK096991 614916 0 0 0 109 0 0 210 0 0 0 0.4622 210 206 0 0
uc.220 n 257 chr7:96245647-96245903 294712 SHFM1 \N DLX5 15539 0 0 0 0 0 0 0 0 0 257 0.569 257 232 257 122
uc.221 p 349 chr7:96253032-96253380 302097 SHFM1 \N DLX5 8062 0 149 61 182 0 0 0 0 349 0 0.7518 349 335 0 0
uc.222 n 201 chr7:113611674-113611874 498119 PPP1R3A FOXP2 HIC 504837 0 0 0 0 0 0 201 0 0 0 0.5102 201 201 201 169
uc.223 n 268 chr7:113612688-113612955 499133 PPP1R3A FOXP2 HIC 503756 0 0 0 0 0 0 268 0 0 0 0.134 268 268 267 234
uc.224 n 295 chr7:113617522-113617816 503967 PPP1R3A FOXP2 HIC 498895 0 0 0 0 0 0 295 0 0 0 0.0052 295 295 0 0
uc.225 n 201 chr7:113627358-113627558 513803 PPP1R3A FOXP2 HIC 489153 0 0 0 0 0 0 201 0 0 0 0.1716 201 199 201 140
uc.226 n 205 chr7:113763821-113764025 650266 PPP1R3A FOXP2 HIC 352686 0 0 0 0 0 0 205 0 0 0 0.0135 205 201 127 76
uc.227 n 231 chr7:113849819-113850049 736264 PPP1R3A FOXP2 HIC 266662 0 0 0 0 0 0 231 0 0 0 0.0699 231 231 231 164
uc.228 n 265 chr7:114671200-114671464 213182 AK096400 \N TFEC 463043 0 0 0 0 0 0 0 0 0 265 0.1057 265 264 265 191
uc.229 n 296 chr7:114689148-114689443 231130 AK096400 \N TFEC 445064 0 0 0 0 0 0 0 0 0 296 0.1924 296 293 0 0
uc.230 p 238 chr7:114873964-114874201 415946 AK096400 \N TFEC 260306 238 0 238 238 0 0 0 0 0 238 0.2964 238 236 0 0
uc.231 n 224 chr7:115136620-115136843 678602 AK096400 TFEC TES 268280 0 0 0 0 0 0 224 0 0 0 0.3641 224 223 224 143
uc.232 p 247 chr7:121499109-121499355 160337 AASS \N CADPS2 14600 171 0 192 175 0 0 0 0 0 247 0.0803 230 198 62 38
uc.233 e 266 chr7:150220055-150220320 48225 C7orf21 CENTG3 ASB10 44205 0 60 0 266 0 0 266 0 0 0 0.1703 266 243 233 203
uc.234 p 272 chr7:156229240-156229511 3267 BC033117 \N AK130204 85708 0 0 0 272 0 0 0 170 272 0 0.4198 272 259 272 188

In column type 'e' is exonic, 'n' is non-exonic and 'p' is possibly exonic.
In right half of table, columns contain the number of element bases overlapping the respective feature.

Reference: Ultraconserved Elements in the Human Genome, Gill Bejerano, Michael Pheasant, Igor Makunin, Stuart Stephen, W. James Kent, John S. Mattick, and David Haussler. Published online May 6 2004; 10.1126/science.1098119 (Science Express Reports) [Abstract]