The Chromosome 7 Annotation Project
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Syntenic Breakpoint Summary

Correlation of segmental duplications on human chromosome 7 with human-mouse syntenic breakpoint regions. All segmental duplications on chromosome 7 greater than 50 kb in size are listed in order from 7pter-7qter by their identifier name (column 1; note that iDup= intrachromosomal, xDup= transchromosomal duplication). The 35 human regions that encompass mouse synteny breakpoints are also listed from 7pter-qter (column 3) and the flanking hmSA-mouse syntenic anchor markers are provided. Comparison of the co-ordinates of the segmental duplications and the human regions where mouse synteny breaks occurred, identified 12 regions of overlap (shaded in grey). In five cases, there were more than one segmental duplication mapped within the region of overlap. The DNA sequences of the segmental duplications and the mouse syntenic anchor loci are available at http://www.chr7.org. The precise position and relationship of the two features along the chromosome are shown in the Genome Browser at the same website.
All Duplications > 50 kb  Duplication Size (bp)  All Syntenic Breakpoint Regions  Region Size (bp)  Syntenic Change 
iDup_7_1  75148       
    hmSA196973 / hmSA196974 9873  Chr5 to Chr5 
    hmSA197826 / hmSA197827 36161  Chr5 to Chr5 
iDup_7_6  67773       
iDup_7_7  127699  hmSA385722 / hmSA258176 99284  Chr5 to Chr5 
iDup_7_7  124171  hmSA13838 / hmSA193154 354411  Chr5 to Chr6 
xDup_7_46  68134       
    hmSA165224 / hmSA165219 77844  Chr6 to Chr12 
iDup_7_13  88594  hmSA103494 / hmSA103488 127254  Chr12 to Chr5 
    hmSA103436 / hmSA103433 91109  Chr5 to Chr5 
    hmSA103265 / hmSA103263 30219  Chr5 to Chr6 
iDup_7_15  53696       
iDup_7_18  78246  hmSA16512 / hmSA50080 558401  Chr6 to Chr9 
iDup_7_15  52698       
iDup_7_25  156231       
iDup_7_25  140603       
iDup_7_26  57685       
iDup_7_27  55196       
    hmSA21555 / hmSA21557 27915  Chr9 to Chr9 
    hmSA21689 / hmSA21691 55275  Chr9 to Chr13 
    hmSA49953 / hmSA49974 303408  Chr13 to Chr11 
iDup_7_30  79903       
iDup_7_33  130719       
xDup_7_291  50995       
    hmSA220922 / hmSA220923 80482  Chr11 to Chr11 
    hmSA221260 / hmSA221261 120854  Chr11 to Chr11 
iDup_7_23  83162  hmSA221963 / hmSA222024 837747  Chr11 to Chr5 
xDup_7_278  62771       
iDup_7_53  105421       
iDup_7_54  247337       
iDup_7_55  136827  hmSA353539 / hmSA218883 2320  Chr5 to Chr5 
xDup_7_291  93655       
xDup_7_293  145626       
xDup_7_58  72790       
xDup_7_293  169406       
xDup_7_294  104155       
iDup_7_66  117832       
iDup_7_68  53045       
iDup_7_68  53129       
iDup_7_55  137251       
iDup_7_54  303106       
iDup_7_83  206483       
iDup_7_84  233976       
xDup_7_154  79817       
iDup_7_90  52629       
iDup_7_98  72470       
iDup_7_99  69801       
iDup_7_100  82459       
iDup_7_102  85313  hmSA183574 / hmSA93056 176434  Chr5 to Chr5 
iDup_7_99  82485       
iDup_7_98  72992  hmSA183580 / hmSA222083 124009  Chr5 to Chr5 
iDup_7_105  297178       
iDup_7_102  61888       
iDup_7_108  100329       
iDup_7_109  95615       
iDup_7_105  310103  hmSA50171 / hmSA222081 297629  Chr5 to Chr5 
iDup_7_110  92980       
iDup_7_112  70803  hmSA93051 / hmSA144376 596792  Chr5 to Chr5 
iDup_7_102  63407       
xDup_7_24  56213       
iDup_7_118  456044       
    hmSA349369 / hmSA349355 37036  Chr5 to Chr12 
    hmSA322553 / hmSA322551 73869  Chr12 to Chr5 
iDup_7_13  88569       
    hmSA294688 / hmSA294685 46347  Chr5 to Chr5 
    hmSA294362 / hmSA294360 35995  Chr5 to Chr5 
    hmSA292493 / hmSA292491 168222  Chr5 to Chr6 
xDup_7_101  120393  hmSA258217 / hmSA258179 160722  Chr6 to Chr5 
    hmSA255156 / hmSA255098 160304  Chr5 to Chr5 
iDup_7_30  82395  hmSA107230 / hmSA144371 288592  Chr5 to Chr5 
iDup_7_30  93055       
xDup_7_44  57137       
xDup_7_44  92657       
    hmSA75979 / hmSA75978 31795  Chr5 to Chr12 
    hmSA73217 / hmSA73216 33907  Chr12 to Chr12 
    hmSA45576 / hmSA45574 12273  Chr12 to Chr6 
xDup_7_267  106776       
xDup_7_113  99917       
xDup_7_114  78802       
iDup_7_139  60920       
iDup_7_141  171405       
    hmSA190953 / hmSA190955 62387  Chr6 to Chr6 
iDup_7_145  333092       
iDup_7_147  71478       
    hmSA192437 / hmSA192439 62521  Chr6 to Chr5 
iDup_7_145  79571       
iDup_7_147  80546       
    hmSA219791 / hmSA219793 11577  Chr5 to Chr5 
iDup_7_145  77794       
iDup_7_145  209095       
    hmSA273843 / hmSA273876 91623  Chr5 to Chr12