The Chromosome 7 Annotation Project
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Overlapping Transcripts on Chromosome 7

List of overlapping transcripts. The two overlapping transcriptional units and their relative orientation to each other is described (determined by NCBI Blast-2-seq). (*Imprinted genes are shown in bold, with overlapping transcript pairs shaded grey). The genomic context of the gene structures are displayed in the Genome Browser at http://www.chr7.org.
Strand  Gene Symbol  Gene Class  Accession #  Strand  Gene Symbol  Gene Class  Accession #  Category 
MGC11257  Known_Gene  BC006224  LOC115330  Known_Gene  BC014241  Structurally overlapping 
MGC11257  Known_Gene  BC006224  GPR30  Known_Gene  AF015257  Structurally overlapping 
FLJ39498  Known_Gene  AK096817  FLJ90562  Known_Gene  AK075043  Sense overlapping 
MAD1L1  Known_Gene  BC009964  FLJ38166  Novel_Gene  AK095485  Structurally overlapping 
KIAA1849  Known_Gene  AB058752  PAPOLB  Known_Gene  BC036653  Structurally overlapping 
KIAA1856  Known_Gene  AB058759  TNRC18  Known_Gene  U80753  Structurally overlapping 
JTV1  Known_Gene  NM_006303  HRI  Known_Gene  AB037790  Antisense overlapping 
DNAH11  Known_Gene  AJ320497  FLJ38646  Known_Gene  AK095965  Antisense overlapping 
GFR  Known_Gene  D87467  DKFZp667A016  Known_Gene  AL833195  Sense overlapping 
HOXA3_variant_2  Known_Gene  NM_153631  FLJ31668  Novel_Gene  AK056230  Antisense overlapping 
FLJ31668  Novel_Gene  AK056230  IMAGE:5180590  Known_Gene  BC035889  Sense overlapping 
IMAGE:5180590  Known_Gene  BC035889  HOXA4  Known_Gene  M74297  Antisense overlapping 
HOXA6  Known_Gene  NM_024014  FLJ34614  Known_Gene  AK091933  Antisense overlapping 
FLJ33300  Known_Gene  AK090619  LOC89231  Known_Gene  AK026768  Structurally overlapping 
KIAA0895  Known_Gene  BC028678  ANLN  Known_Gene  AF273437  Antisense overlapping 
KIAA0322  Known_Gene  AB002320  FLJ35943  Novel_Gene  AK093262  Structurally overlapping 
PKD1L1  Known_Gene  AB061683  FLJ21075  Known_Gene  NM_025031  Structurally overlapping 
PKD1L1  Known_Gene  AB061683  FLJ34738  Novel_Gene  AK092057  Antisense overlapping 
DDC  Known_Gene  M88700  FLJ32838  Novel_Gene  AK057400  Antisense overlapping 
GRB10*  Known_Gene  D86962  FLJ40093  Novel_Gene  AK097412  Structurally overlapping 
ZNF117  Known_Gene  NM_024498  H-plk  Known_Gene  M55422  Sense overlapping 
IMAGE:5093832  Known_Gene  BC027734  FLJ31298  Novel_Gene  AK055860  Structurally overlapping 
SDCR2A  Known_Gene  AK001762  hPMS6  Known_Gene  D38438  Structurally overlapping 
FLJ39672  Novel_Gene  AK096991  WBSCR17  Known_Gene  AF410457  Antisense overlapping 
POM121  Known_Gene  AB014518  WBSCR20C_variant_1  Known_Gene  NM_032158  Antisense overlapping 
POM121  Known_Gene  AB014518  WBSCR20C_variant_4  Known_Gene  NM_149379  Antisense overlapping 
PMS2L14  Known_Gene  AB017005  hPMS4  Known_Gene  D38436  Sense overlapping 
PMS2L14  Known_Gene  AB017005  BC022013  Novel_Gene  BC022013  Structurally overlapping 
PMS2L14  Known_Gene  AB017005  WBSCR20B  Known_Gene  AF416610  Structurally overlapping 
PMS2L14  Known_Gene  AB017005  PMS2L9  Known_Gene  U38979  Sense overlapping 
PMS2L14  Known_Gene  AB017005  PMS5  Known_Gene  D38437  Sense overlapping 
IMAGE:5273288  Known_Gene  BC036053  FGL2  Known_Gene  Z36531  Structurally overlapping 
AIP1  Known_Gene  NM_012301  MGC:34774  Novel_Gene  BC027852  Structurally overlapping 
AIP1  Known_Gene  NM_012301  AF521131  Partial_Gene  AF521131  Structurally overlapping 
DMTF1  Known_Gene  AF084530  MGC4175  Known_Gene  BC002837  Antisense overlapping 
ABCB1  Known_Gene  M14758  RPIB9  Known_Gene  NM_138290  Structurally overlapping 
MCFP  Known_Gene  AF125531  ASK  Known_Gene  AB028069  Antisense overlapping 
FLJ32110  Novel_Gene  AK056672  MGC:26647  Known_Gene  BC028365  Structurally overlapping 
GNGT1  Known_Gene  BC030956  TFPI2  Known_Gene  AK092499  Antisense overlapping 
PPP1R9A*  Known_Gene    FLJ33602  Novel_Gene    Antisense overlapping 
IMAGE:3842949  Known_Gene  BC013888  FLJ30064  Novel_Gene  AK054626  Structurally overlapping 
IMAGE:3842949  Known_Gene  BC013888  IMAGE:3350750  Novel_Gene  BC000204  Structurally overlapping 
TRRAP  Known_Gene  AF076974  FLJ10671  Novel_Gene  AK001533  Sense overlapping 
FLJ10671  Novel_Gene  AK001533  KIAA1625  Known_Gene  AB046845  Antisense overlapping 
G10  Known_Gene  BC022821  KIAA0632  Known_Gene  AB014532  Antisense overlapping 
ZNF38  Known_Gene  AK075324  ZNF3_variant_1  Known_Gene  NM_017715  Antisense overlapping 
AP4M1  Known_Gene  AF020796  TAF6_variant_1  Known_Gene  NM_005641  Antisense overlapping 
STAG3  Known_Gene  AJ007798  DKFZp434F086  Known_Gene  AL834317  Sense overlapping 
STAG3  Known_Gene  AJ007798  FLJ34099  Novel_Gene  AK091418  Antisense overlapping 
DKFZp434F086  Known_Gene  AL834317  FLJ34099  Novel_Gene  AK091418  Structurally overlapping 
DKFZp434F086  Known_Gene  AL834317  PILRB  Known_Gene  AF161081  Sense overlapping 
RAB-R  Known_Gene  BC017329  IRS3L  Known_Gene  AK090744  Sense overlapping 
FBXO24_variant_1  Known_Gene  NM_033506  FLJ40386  Novel_Gene  AK097705  Antisense overlapping 
FLJ40386  Novel_Gene  AK097705  PCOLCE  Known_Gene  L33799  Antisense overlapping 
MUC3B  Known_Gene  AB038783  FLJ39484  Novel_Gene  AK096803  Antisense overlapping 
FLJ40957  Novel_Gene  AK098276  FLJ13902  Known_Gene  AK023964  Sense overlapping 
POLR2J2B  Known_Gene  AJ277740  TCAG_hCT1815882  Partial_Gene  hCT1815882  Structurally overlapping 
FLJ40218  Known_Gene  AK097537  P37NB  Known_Gene  U32907  Antisense overlapping 
FLJ40218  Known_Gene  AK097537  IMAGE:5404753  Partial_Gene  BC036938  Structurally overlapping 
DKFZp434E092  Known_Gene  AL834175  S100A14  Known_Gene  NM_021039  Structurally overlapping 
PMPCB  Known_Gene  AF054182  ZRF1  Known_Gene  X98260  Antisense overlapping 
FLJ11785  Known_Gene  AF317622  TCAG_hCT1818545  Known_Gene  hCT1818545  Antisense overlapping 
COG5  Known_Gene  AF058718  GPR22  Known_Gene  U66581  Structurally overlapping 
TCAG_hCT1953978  Known_Gene  hCT1953978  LAMB4  Known_Gene  THC1142615  Sense overlapping 
IMMP2L  Known_Gene  AF359563  FLJ11129  Partial_Gene  AK001991  Structurally overlapping 
IMMP2L  Known_Gene  AF359563  TCAG_hCT1645734  Known_Gene  hCT1645734  Structurally overlapping 
ST7OT1  Known_Gene  AF400039  RAY1_variant_a  Known_Gene  AF234882  Antisense overlapping 
RAY1_variant_a  Known_Gene  AF234882  ST7OT2_variant_1  Known_Gene  AF400045  Antisense overlapping 
ST7_variant_a  Known_Gene  AY009152  ST7OT3  Known_Gene  AF400044  Sense overlapping 
CADPS2  Known_Gene  CADPS2  LOC168433  Known_Gene  AF447589  Structurally overlapping 
CADPS2  Known_Gene  CADPS2  MGC:35222  Novel_Gene  BC029264  Structurally overlapping 
p100  Known_Gene  U22055  NAG14  Known_Gene  AF196976  Structurally overlapping 
FLJ33365  Novel_Gene  AK090684  ATP6V1F  Known_Gene  D49400  Antisense overlapping 
UBE2H  Known_Gene  Z29330  CATR1  Known_Gene  U25433  Structurally overlapping 
CPA5  Known_Gene  AF384667  FLJ40591  Known_Gene  AK097910  Antisense overlapping 
MEST_isoform_2*  Known_Gene  MEST_isoform_2  MESTIT1*  Known_Gene  MESTIT1  Structurally overlapping 
MEST*  Known_Gene  D78611  COPG2  Known_Gene  AF157833  Antisense overlapping 
COPG2  Known_Gene  AF157833  COPG2IT1*  Known_Gene  COPG2IT1  Structurally overlapping 
KIAA1550  Known_Gene  AB046770  FLJ38287  Novel_Gene  AK095606  Sense overlapping 
FLJ11000  Known_Gene  AK001862  MGC5242  Known_Gene  BC000168  Antisense overlapping 
HSPC049  Known_Gene  AF161534  FLJ32860  Novel_Gene  AK057422  Structurally overlapping 
CHRM2  Known_Gene  AL832585  FLJ40151  Partial_Gene  AK097470  Structurally overlapping 
ATP6V0A4_variant_1  Known_Gene  NM_020632  FLJ31279  Partial_Gene  AK055841  Antisense overlapping 
CGI-74  Known_Gene  AF151832  pp12708  Novel_Gene  AF318327  Structurally overlapping 
THC1179197  Known_Gene  THC1179197  HIPK2  Known_Gene  AF208291  Sense overlapping 
FLJ40852  Known_Gene  AK098171  THC1158528  Novel_Gene  THC1158528  Antisense overlapping 
EPHA1  Known_Gene  M18391  DKFZp686O0656  Known_Gene  AL833583  Structurally overlapping 
DKFZp686O0656  Known_Gene  AL833583  TAS2R41  Novel_Gene  AF494232  Structurally overlapping 
TCAG_hCT1964447  Known_Gene  hCT1964447  DKFZp667J212  Known_Gene  AL832862  Sense overlapping 
FLJ12700  Known_Gene  NM_024910  FLJ32307  Novel_Gene  AK056869  Structurally overlapping 
TCAG_hCT7210  Known_Gene  hCT7210  FLJ36112  Known_Gene  AK093431  Sense overlapping 
LR8  Known_Gene  BC004358  HCA112  Known_Gene  BC008303  Structurally overlapping 
NOS3  Known_Gene  M95296  FLJ14885  Novel_Gene  AK027791  Antisense overlapping 
CENTG3  Known_Gene  AF359283  FLJ34452  Known_Gene  AK091771  Structurally overlapping 
NUB1  Known_Gene  AF300717  FLJ32062  Known_Gene  AK056624  Antisense overlapping 
TCAG_hCT10662  Partial_Gene  hCT10662  LOC285975  Known_Gene  XM_212109  Structurally overlapping 
FLJ32047  Novel_Gene  AK056609  PAXIP1L  Known_Gene  U80735  Antisense overlapping 
IMAGE:5287138  Partial_Gene  BC031272  HTR5A  Known_Gene  AF498985  Antisense overlapping 
PTPRN2_variant_1  Known_Gene  NM_002847  IMAGE:4475530  Novel_Gene  BC034557  Structurally overlapping 
VIPR2  Known_Gene  X95097  IMAGE:4903629  Novel_Gene  BC024307  Antisense overlapping