The Chromosome 7 Annotation Project
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Chromosome 7 Clinical table -- DUPLICATIONS (Malignant)

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# Unique IDKaryotypePhenotypeCytogenetic Break FromCytogenetic Break ToMolecular Breakpoint #1Molecular Breakpoint #2Pubmed IDPatient ID          Comments          
1 12850374_1_4 46, XX, der(6)ins(6;7)(p21;q34q11)del(6)(p21), der(7)del(7)(p15)t(6;7)(p21;q11), dup(7)(p22p15) low-grade malignant endometrial stromal sarcoma, abdominal metastases p22 p15     12850374 1 Mitelman Database, Reference No. 10210 Edit
2 14513052_6 +7p15-p22, +Xp21-p22 [by CGH] Burkitt's lymphoma p22 p15     14513052 6   Edit
3 15949565_4_1 rev ish enh(7p22, 7q, 11q12, 19p, 19q13qter, 20p13, 20q13qter, ), dim(1p21, 3q13, 10q23) [CGH] sacral chordoma p22 p22     15949565 4   Edit
4 14513052_32 4?, X?, t(8;14) [+7p14-p21 by CGH] Burkitt's lymphoma p21 p14     14513052 32   Edit
5 14513052_45 4?, X?, dup(1)(q22q31), t(8;14) [+1p22-p32, +3p21-p25, +4p13-p16, +4q21-q31, +7p13-p21, +8, +9q21-q31, +10, +11, +12q14-q22, +13q13-q21, +14q21-q31, +Xq12-q28 by CGH] Burkitt's lymphoma p21 p13     14513052 45   Edit
6 18941867_2_1 4?,XY.arr −5q22qter, +7p14p21, +7q11.2q22, −7q31qter, +8, +9, +12, −13, −14, −17p adult infratentorial glioma, glioblastoma p21 p14     18941867 Case 2 7p gain detected in 5 of 11 cases (45%) Edit
7 18483359_1 arr 7p15.1(27,845,626-30,383,3 60)x3 metastatic melanoma p15.1 p15.1     18483359   observed in 27.3% of 19 patient samples; 2.5 Mb gain encompasses JAZF1, CHN2 Edit
8 12152163_CAOV3_2 +1p, +1q21, -1q23-q32, +1q42, +2p25-q21, +3p, -3p21-p22, -4p12-p13.5, -4q21-qter, +5q13-pter, -5q11.2-q12, +6p23-q12, -6q21-qter, -7p21, +7p15-qter, -9p21-pter, -9q13-q22, +10, -11p12-pter, +11q12-q14, -11q23-qter, +12p12-pter, +12q24.2-q24.3, -13q, +14q24-qter, +15q23-qter, -16p12-p13.1, -16q13-q24, -17p13-q12, +17q21-qter, +18p11.2-pter, -18q12-qter, +19q13.2-qter, +20p11.2-qter, -21q21, +22q [CGH] serous ovarian carcinoma p15 qter     12152163 CAOV3   Edit
9 18941867_8 4?,XX.arr +7p12p13, −18q, −X adult infratentorial glioma, anaplastic astrocytoma p13 p12     18941867 Case 8 7p gain detected in 5 of 11 cases (45%) Edit
10 15949565_6_2 rev ish enh(1q21q24, 7p21pter, 7p12q22, 7q36qter, 16q24, 17q25, 19p13pter), dim(8p22, 9p13p24) [CGH] sacral chordoma p12 q22     15949565 6   Edit
11 18704985 dup(7)(p11.2p11.2) [CNV detected by microarray] osteosarcoma p11.2 p11.2     18704985   observed in 16 of 31 patient tumors Edit
12 19276369 arr 7p11.2(54,600,000-55,300,0 00)x3 oral squamous cell carcinoma p11.2 p11.2 RP11-81B20   19276369   present in 9 of 29 patients (31%) Edit
13 18941867_2_2 4?,XY.arr −5q22qter, +7p14p21, +7q11.2q22, −7q31qter, +8, +9, +12, −13, −14, −17p adult infratentorial glioma, glioblastoma p11.2 q22     18941867 Case 2   Edit
14 11745275_9 4?, XX, -1p21-p31, -3cen-p21, +4q, -6p21.3-pter, +7p15-pter, +8q, -9p21-pter, -10p, -11, -12p11.2-pter, -13q, -14q24-qter, +15q24-qter, -20p ovarian carcinoma pter p15     11745275 9 karyotype based on CGH Edit
15 11745275_5 4?, XX, -1p13-p31, -2p23-pter, -3cen-p14, -6q12-qter, +7pter-q21, -10p11.2-q22, +12p, +12cen-q21/+ +12q13-q21, -13q22--qter, +14q/++14q31-qter, +15q22-qter, -18cen-q2 breast carcinoma pter q21     11745275 5 karyotype based on CGH Edit
16 11745275_25 4?, XX, +1q21-qter, +2q21-qter, +3pter-q22, +5, +7pter-q22/+ +7p14-pter, +8, +14q, +15q, -Xq13-qter Hodgkin disease pter q22     11745275 25 karyotype based on CGH Edit
17 11745275_12 4?, XY, +5p, +7pter-q32, +10q24-q26, -13q, +15q astrocytoma G2-3 pter q32     11745275 12 karyotype based on CGH Edit
18 11745275_11 4?, XX, -6p12-q16, +7cen-q22 breast carcinoma cen q22     11745275 11 karyotype based on CGH Edit
19 11745275_13 4?, XX, -2pter-p23, -2q33-qter, +4q31.1-q33, +7cen-q31, -11q23-qter, -18q12-qter breast carcinoma cen q31     11745275 13 karyotype based on CGH Edit
20 12152163_OAW42 +1q, -2q21-q37, -3p12-p21, +3p22-pter, +3q26.1-qter, -4p15.3-qter, -5q12-q13, -9p24-q31, 10q, -11p14-q12, -11q14-q23, -12p, +12q12-q15, -13q, +14q22-qter, -15q12-q21, -15q24-qter, +16p12-p13.2, +17q, -18, +19q13.1-q13.4, +20, -21q11.2-q22 [CGH] serous ovarian carcinoma pter qter     12152163 OAW42   Edit
21 15949565_5_1 rev ish enh(7p21pter, 7q31qter) [CGH] sacral chordoma pter p21     15949565 5   Edit
22 15949565_6_1 rev ish enh(1q21q24, 7p21pter, 7p12q22, 7q36qter, 16q24, 17q25, 19p13pter), dim(8p22, 9p13p24) [CGH] sacral chordoma pter p21     15949565 6   Edit
23 15759858 dup(7)(p21.2-->pter) partial trisomy 7p syndrome pter p21.2     15759858     Edit
24 12034527_2 46, XY, der(1)t(1;1)(p36;q32), -7, +21c [17]/ 46, idem, del(9)(p22)[10] [before therapy]46, XY, der(1)t(1;1), -7, der(7)t(7;7)(p22;q10), del(9), +21c [13]/47, XY, +21c [2] [at recurrence] acute monoblastic leukemia - M5, Down syndrome q10 qter     12034527   Mitelman Database, Reference No. 9530 Edit
25 15949565_4_2 rev ish enh(7p22, 7q, 11q12, 19p, 19q13qter, 20p13, 20q13qter, ), dim(1p21, 3q13, 10q23) [CGH] sacral chordoma q10 qter     15949565 4   Edit
26 12810258_4630 46, XY, dup(7)(q11q36) meningioma, grade II q11 q36     12810258 T4630 Mitelman Database, Reference No. 10151 Edit
27 1671647_626 51, XX, +del(1)(p22), +der(3)t(3;13)(p11;p11), del(6)(q21), +dup(7)(q11q36), t(8;14)(q24;q32), +18, +19 [18]/ 98, XX, 4n+/- of the clone above diffuse large B-cell lymphoma q11 q36     1671647 UTN 626 tetrasomy of 7q11-q36; Mitelman Database, Reference No. 3729 Edit
28 7987800_28 44, X,-Y, del(2)(q33q34), t(3;11)(q27;q23), dup(4)(q3?1q2?6), add(5)(q34), t(6;16)(q23;p13), der(8)t(8;8)(p21;q11), add(9)(q34), add(12)(q24), -13, -15, der(21)t(3;21)(p21;q21), der(22)t(13;22)(q14;p13), +mar [10]/ 44, idem, dup(7)(q11q31) [3] [lymph node, TPA] peripheral T-cell lymphoma q11 q31     7987800 28 (L45/89 & L263/89) Mitelman Database, Reference No. 5593 Edit
29 2278958_7_2 48, XX, +6, +?del(6)(q21), ?t(6;9)(p23;q34), +dup(7)(q11q32), -9, t(14;18)(q32;q21)
55, XX, +2, +7, +7, +add(11)(q23), +12, +14, t(14;18)x2, +18, +r, +mar/ 55, idem, +3, +dup(7), -17, -mar
follicular lymphoma q11 q32     2278958 7 Mitelman Database, Reference No. 3294 Edit
30 2758395_78 46, XY, dup(7)(q11q22) acute myeloblastic leukemia - M1 q11 q22     2758395 78 Mitelman Database, No. 2971 Edit
31 11745275_21_2 4?, XX, -1q32-qter, -2p11.2-pter, -2q21-q24, +3p21-pter, -3q12-qter, -6p21.3-q23. -7p11.2-pter, +7q11.2-q31, -8p11.2-qter, -9p, -10pter-q21, -13q, -16, +17cen-p12, -18q12-qter, -21q, Xp11.4-qter breast carcinoma q11.2 q31     11745275 21 karyotype based on CGH Edit
32 7514153_CEM/A7_1 91-104<4n>, XX, -X, -X, add(1)(p33), add(1)(q22), dup(7)(q11q31), del(8)(p10)x2, -9, add(9)(p12), der(9)del(9)(p10)inv(9)(p10q13)x2, +del(10)(p13), +13, -14, =15, -16, -18, +add(20)(q11), +21, +22, +5-9mar [cp5] T-cell leukemia, drug resistant q11.23 q31.2 D7Z1/ D7S2512 D7S2860/ D7S471 7514153, 8546902, 10198619 cell line CEM/A7 Edit
33 10360374_9_2 45, XX, add(6)(p25), -7, dup(7)(q21q32), t(9;22)(q34;q11) [25] adult acute lymphocytic leukemia q21 q32     10360374 9 Mitelman Database, Reference No. 8064 Edit
34 3080042_9_2 46, Xq+Y, inv dup(7)(q21q35-36), t(7;15)(q34-35;q13), i(8q), dup X(q12-qter) T prolymphocytic leukemia q21 q35-36     3080042 9   Edit
35 8382105_10 58-60, XX?, der(1)t(1;2)(p11;p11), del(6)(q22), dup(7)(q21q31), del(9)(p21), del(11)(q22), add(16)(q12), add(19)(q13), inc uterine metaplastic carcinoma q21 q31     8382105 10 Mitelman Database, Reference No. 4967 Edit
36 8116566_37_2 46, XY, der(8)t(7;8)(q21;q24)dup(7)(q21q36), der(14)t(8;14)(q24;q32), der(21)t(1;21)(q11;p13) peripheral B-cell neoplasm q21 q36     8116566 37 Mitelman Database, Reference No. 5436 Edit
37 18483359_2 arr 7q21.1(84,987,863-87,283,6 35)x3 metastatic melanoma q21.1 q21.1     18483359   observed in 27.3% of 19 patient samples; 2.3Mb gain encompasses DMFT1, ABCB1 Edit
38 11745275_20b 4?, XX, +6p11.2-pter, +6q24-qter, +7q22-qter, +14q22-qter, +16p, +17 thyroid carcinoma q22 qter     11745275 20b karyotype based on CGH Edit
39 12152163_OVCAR-3_2 +1p34.2-pter, +2p22-p23, -2q21, +3q, +5q23-qter, -6q24-qter, -7p11.2-pter, +7q22-qter, -8q21, +9p23-pter, -9q13-q33, -10p11.2-pter, +11p, +11q12-q14, -11q21-qter, +12p, -13q, +13q14, -14q12-q21, -15q, -16q12.1-q24, +17q22, +18p, -18q21-qter, +19q, +20p13- [CGH] serous ovarian carcinoma q22 qter     12152163 OVCAR-3   Edit
40 14513052_7 +2, +7q22-q36, +12, +21, +22 [by CGH] Burkitt's lymphoma q22 q36     14513052 7   Edit
41 8289502_6_2 77, XX, +X, -Y, +3, -4, +6, der(6)del(6)(q23)dup(6)(p25p21)x2, dup(7)(q22q32)x2, +i(7)(p10), +11, +11, +12, t(12;17)(p11;q11)x2, der(14)t(14;19)(q32;p13), t(14;19), add(15)(p13), -17, +19, +20, +21, +mar/ 80, idem, +8, +8, +16/ 45, X, -Y Hodgkin disease, mixed cellularity q22 q32     8289502 6 Mitelman Database, Reference No. 5337 Edit
42 7522537_1_1 46, XX, del(5)(?q31q34), dup(7)(?q22q32), r(7) bilineage or biphenotypic leukemia q22 q32     7522537 1 Mitelman Database, Reference No. 5401 Edit
43 1377005_6_2 45-46, XY, der(1)t(1;8)(p22;q13)dup(1)(q21q25), der(2)t(2;6)(p16;p12), del(6) (p12), +t(7;20)(q11;p12), der(8)t(1;8), der(10)t(4;10)(q11;q23), add(13)(p13), -17/ 46-48, XY, t(1;4)(p34;q35), dup(1), der(2), add(3)(q21), del(6), dup(7) (q22q32), +dup(7), t(7;20), der(10), add(13) prostate cancer q22 q32     1377005 6 Mitelman Database, Reference No. 4067 Edit
44 1377005_7 39-43, XY, ins(1;?)(p32;?), t(1;16)(q21;q22), add(3)(p13), -4, -5, del(6)(p21), dup(7)(q22q32), del(8)(p21), del(10)(q24), +der(11)t(3;11)(p21;p13)ins(11;?)(q14-21; ?), -13, -17, add(18)(q21), +1-4mar/ 82-89, idemx2/ 142-156, idemx4, inv(6)(q15q21), der(12)t(1;12)(q25;q13), add(19)(p13), inc/ 211-291, idemx6 prostate cancer q22 q32     1377005 7 Mitelman Database, Reference No. 4067 Edit
45 15325092_3 44, XY, del(5)(q13), -7, der(7)hsr(7)(p?)t(7;18)(q25;?), der(16)t(16;18)(q12;?), -18, del(20)(p12) [11]/ 44, idem, der(20)t(9;20)(?;p12) [5] [karyotyped by SKY]
rev ish enh(3p24p25, 7q22, 11q13, 19p13.3), dim(6q27, 11q14q22, 12q24.1qter, 16q23, 18p11.3, 20p12pter) [detected by CGH]
refractory anemia with excess of blasts in transformation q22       15325092, 15611930 3 Mitelman Database, Reference No.10754 Edit
46 15325092_1 45, XY, -5 [2]/ 44, XY, -5, der(17)t(5;17)(?;p11)hsr(17)(q21q22), -18 [13]/ 46, XY [3] [karyotyped by SKY]

rev ish enh(7q22, 11q13), dim(3p23p24.5, 5q11q33, 6q23qter, 17q23qter, 18(x2), Xq25, Xq27), amp(17q11q22) [detected by CGH]
refractory anemia with excess of blasts q22 q22     15325092, 15611930 1   Edit
47 16364762_49 65-71, -X, -Y, +add(1)(p11), t(1;1)(p10;p10), +3, der(4)del(4)(p11)hsr(4)(p11), -5, -5, +der(6)t(5;6)(q15;q13), +dup(7)(q22q23), +add(8)(p21), der(8;14)(q10;q10), -9, -9, -10, +add(11)(p13), der(11)add(11)(q13)hsr(q13)x2, der(11;15)(q10;q10), -12, -13, i(13)(q10)x2, -14, i(14)(q10), add(15)(p11)x2, -16, add(17)(p11), -18, -18, -18, -19, -19, -21, -21, i(21)(q10), inc [cp5] squamous cell carcinoma of the oral cavity - metastasis q22 q23     16364762 49 Mitelman Database, Reference No. 11284 Edit
48 14513052_23 +1q31-q44, +5p13-p15, +7q31-q36, +12q22-q24, +Xq26-q28 [by CGH] Burkitt's lymphoma q31 q36     14513052 23   Edit
49 15198354_3031 47-50, XX, +X, add(1)(p36.3), del(1)(q25)x1-2, +del(1)(p13p36.1)x1-2, inv(1)(p13q25), del(2)(q31q35), -3 or der(3)inv(3)(q21q26)add(3)(p12), +4, -5, del(6)(q15), dup(7)(q31q34), t(8;14)(q24;q32), -10, del(11)(q23), +12, +add(12)(p12), add(19)(p13), del(20)(q11.2q13.3), +1-3mar diffuse large B-cell lymphoma q31 q34     15198354 3031 Mitelman Database, Reference No.10625 Edit
50 15949565_5_2 rev ish enh(7p21pter, 7q31qter) [CGH] sacral chordoma q31 qter     15949565 5   Edit
51 21916832_2_2 46,XY.ish i(7)(q),dup(7)(q31q31) Chronic MyeloidLeukemia inblast crisis q31 q31     21916832 UPN-02   Edit
52 21916832_3 4?,XY,dup(7)(q31q31) MyelodysplasticSyndrome q31 q31     21916832 UPN-03   Edit
53 18483359_3 arr 7q31.31(118,941,035-124,625,5 14)x3 metastatic melanoma q31.31 q31.31     18483359   observed in 36.4% of 19 patient samples; 5.7Mb gain encompasses ING3, WNT16, PTPRZ1, SPAM1, POT1 Edit
54 14513052_5 47, X?, +7, t(8;22)(q24;q11) [+3q26-q29, +7q32-q36, +20q11-q13 by CGH] Burkitt's lymphoma q32 q36     14513052 5 Mitelman Database, Reference No. 10367 Edit
55 14513052_44 4?, X?, del(3)(p24), t(8;14) [+2p21-p25, +2q35-q37, +4p15-p16, +5p13-p15, +5q32-q35, +6p21-p25, +6q24-q27, +7q32-q36, +8q23-q24, +9q33-q34, +10q25-q26, +11, +12, +13q32-q34, +14q31-q32, +15q24-q26, +16, +17, +20, +22 by CGH] Burkitt's lymphoma q32 q36     14513052 44   Edit
56 15198354_7071_1 44-47, X, -X, der(2;12)(p10;q10), del(4)(q21q25), del(5)(q22q35), der(6;17)(p10;q10), +7, dup(7)(q32q36)x2, -9, del(9)(q12q22), +del(10)(q24q26), t(14;18)(q32;q21), +17, +18, +18, add(19)(q13), del(22)(q12), +mar [cp21] follicular lymphoma q32 q36     15198354 7071 Mitelman Database, Reference No.10625 Edit
57 18483359_4 arr 7q32.3q35(131,765,107-146,524,5 65)x3 metastatic melanoma q32.3 q35     18483359   observed in 27.3% of 19 patient samples; 14.8 Mb gain encompasses BRAF Edit
58 16199894 dup(7)(q34q34) [CNVs detected by FISH] thyroid tumors q34 q34     16199894   BRAF copy number gains were seen in 16-45% of follicular thyroid tumor Edit
59 15949565_6_3 rev ish enh(1q21q24, 7p21pter, 7p12q22, 7q36qter, 16q24, 17q25, 19p13pter), dim(8p22, 9p13p24) [CGH] sacral chordoma q36 qter     15949565 6   Edit